Variant report

Variant	rs4603808
Chromosome Location	chr2:30319323-30319324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12052275	0.84[ASN][1000 genomes]
rs1345151	0.81[ASN][1000 genomes]
rs1509576	0.81[ASN][1000 genomes]
rs1509579	0.80[ASN][1000 genomes]
rs1947144	0.91[ASN][1000 genomes]
rs2361745	0.82[EUR][1000 genomes]
rs2361751	0.84[ASN][1000 genomes]
rs3886897	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332963	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951982	0.81[ASN][1000 genomes]
rs4952094	0.84[ASN][1000 genomes]
rs4952097	0.83[EUR][1000 genomes]
rs6547997	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6739748	0.82[ASN][1000 genomes]
rs7558409	0.83[EUR][1000 genomes]
rs7585724	0.80[ASN][1000 genomes]
rs7596566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603389	0.80[ASN][1000 genomes]
rs7608690	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30316400-30319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:30318400-30319600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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