Variant report

Variant	rs2361745
Chromosome Location	chr2:30336769-30336770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1509578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868072	1.00[JPT][hapmap]
rs1868073	1.00[JPT][hapmap]
rs2084336	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2361746	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886897	0.91[EUR][1000 genomes]
rs4332963	0.91[EUR][1000 genomes]
rs4603808	0.82[EUR][1000 genomes]
rs4952097	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952099	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547992	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547997	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6737446	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6741070	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7564198	1.00[JPT][hapmap]
rs7596566	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30327400-30337600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:30335400-30337400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:30335600-30337800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:30335600-30338000	Enhancers	NH-A	brain
5	chr2:30335600-30338400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:30335800-30337800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:30335800-30338800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:30336000-30337200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:30336000-30338200	Enhancers	Osteobl	bone
10	chr2:30336000-30338800	Enhancers	HMEC	breast
11	chr2:30336000-30338800	Enhancers	NHDF-Ad	bronchial
12	chr2:30336000-30339000	Enhancers	NHLF	lung
13	chr2:30336200-30336800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:30336200-30337200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:30336200-30337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:30336200-30337200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:30336200-30337200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:30336200-30337200	Enhancers	NHEK	skin
19	chr2:30336200-30337400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:30336200-30337400	Enhancers	A549	lung
21	chr2:30336200-30337600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:30336200-30337800	Enhancers	HepG2	liver
23	chr2:30336200-30338600	Enhancers	HSMMtube	muscle
24	chr2:30336200-30338800	Enhancers	HSMM	muscle
25	chr2:30336400-30337000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:30336400-30337000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:30336400-30337200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:30336400-30337200	Enhancers	Colon Smooth Muscle	Colon
29	chr2:30336400-30337200	Enhancers	HUVEC	blood vessel
30	chr2:30336400-30337600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:30336600-30336800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr2:30336600-30336800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:30336600-30337000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:30336600-30338200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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