Variant report

Variant	rs6737446
Chromosome Location	chr2:30403320-30403321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1509578	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1868072	1.00[JPT][hapmap]
rs1868073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361745	0.80[EUR][1000 genomes]
rs4952099	1.00[JPT][hapmap]
rs4952101	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs6547997	0.83[EUR][1000 genomes]
rs7564198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30388800-30407200	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:30400000-30405000	Enhancers	K562	blood
3	chr2:30400400-30403600	Enhancers	Left Ventricle	heart
4	chr2:30400800-30404400	Enhancers	Fetal Heart	heart
5	chr2:30401000-30403400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:30402000-30403400	Enhancers	Psoas Muscle	Psoas
7	chr2:30402400-30407800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:30403000-30404200	Weak transcription	Right Ventricle	heart
9	chr2:30403200-30403400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:30403200-30403400	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:30403200-30403400	Enhancers	Lung	lung
12	chr2:30403200-30403400	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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