Variant report

Variant	rs56700110
Chromosome Location	chr7:26594782-26594783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28675083	1.00[AMR][1000 genomes]
rs61454071	1.00[AMR][1000 genomes]
rs73683499	1.00[AMR][1000 genomes]
rs73686604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26586800-26595600	Weak transcription	Fetal Kidney	kidney
2	chr7:26588000-26595000	Enhancers	Primary hematopoietic stem cells	blood
3	chr7:26588000-26596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:26589000-26595800	Weak transcription	Lung	lung
5	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
6	chr7:26589800-26595800	Weak transcription	Gastric	stomach
7	chr7:26590800-26595800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:26591600-26600000	Weak transcription	Hela-S3	cervix
9	chr7:26592200-26596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:26592400-26595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:26592600-26595400	Weak transcription	Fetal Brain Male	brain
12	chr7:26593000-26595600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:26593400-26595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:26593600-26595800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:26593600-26607000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:26593800-26596600	Enhancers	Fetal Stomach	stomach
17	chr7:26594000-26595600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:26594400-26594800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:26594600-26595600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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