Variant report

Variant	rs73686604
Chromosome Location	chr7:26746515-26746516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28675083	1.00[AMR][1000 genomes]
rs56700110	1.00[AMR][1000 genomes]
rs61454071	1.00[AMR][1000 genomes]
rs6963067	1.00[AMR][1000 genomes]
rs73683499	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv5672	chr7:26711462-26757891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1018125	chr7:26745074-26789814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:26729000-26756400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:26729200-26747000	Weak transcription	Primary B cells from cord blood	blood
4	chr7:26729200-26747000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:26729600-26750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:26730000-26747000	Weak transcription	Fetal Kidney	kidney
7	chr7:26731800-26779200	Weak transcription	Spleen	Spleen
8	chr7:26732200-26765000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:26740400-26782400	Weak transcription	Fetal Intestine Small	intestine
10	chr7:26742800-26750800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:26743800-26747800	Enhancers	NHDF-Ad	bronchial
12	chr7:26743800-26747800	Enhancers	NHLF	lung
13	chr7:26744200-26747600	Enhancers	HUVEC	blood vessel
14	chr7:26745000-26780800	Weak transcription	Aorta	Aorta
15	chr7:26745200-26747200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:26745200-26747200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:26745200-26750200	Weak transcription	Fetal Lung	lung
18	chr7:26745400-26747200	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:26745400-26764600	Weak transcription	Adipose Nuclei	Adipose
20	chr7:26745600-26747200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:26745600-26748400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:26745600-26749400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:26745600-26754400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:26745800-26748800	Weak transcription	NHEK	skin
25	chr7:26745800-26759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:26745800-26764600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:26746000-26747600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:26746200-26747600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:26746200-26747600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:26746200-26780600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:26746400-26747200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:26746400-26747400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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