Variant report

Variant	rs6963067
Chromosome Location	chr7:26833525-26833526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17464902	1.00[AMR][1000 genomes]
rs17465090	1.00[AMR][1000 genomes]
rs17500187	1.00[AMR][1000 genomes]
rs61454071	1.00[AMR][1000 genomes]
rs6946148	1.00[AMR][1000 genomes]
rs73683499	1.00[AMR][1000 genomes]
rs73683588	1.00[AMR][1000 genomes]
rs73686604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv887855	chr7:26823963-26872652	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26808000-26854800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:26810600-26835200	Weak transcription	Spleen	Spleen
3	chr7:26812400-26849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:26812800-26841600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:26813000-26834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:26813000-26871200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:26816600-26834000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:26821000-26843000	Weak transcription	Fetal Lung	lung
9	chr7:26822400-26834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:26823000-26834600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:26823000-26846400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:26823400-26833800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:26823400-26839600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:26825400-26872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:26825600-26837400	Weak transcription	Lung	lung
16	chr7:26827600-26835200	Weak transcription	Primary B cells from cord blood	blood
17	chr7:26827600-26836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:26831600-26833600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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