Variant report

Variant	rs56721354
Chromosome Location	chr11:16846678-16846679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16933508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933515	0.91[AFR][1000 genomes]
rs16933529	0.85[AFR][1000 genomes]
rs16933548	0.80[AFR][1000 genomes]
rs57289260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61217675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486315	0.80[AFR][1000 genomes]
rs7103382	0.80[AFR][1000 genomes]
rs7122601	0.88[AFR][1000 genomes]
rs7129494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423200	0.88[AFR][1000 genomes]
rs73425209	0.80[AFR][1000 genomes]
rs7946609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16833600-16847400	Weak transcription	Aorta	Aorta
4	chr11:16834800-16847400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:16836000-16861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:16837200-16848600	Weak transcription	Brain Germinal Matrix	brain
7	chr11:16838200-16847400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:16838800-16846800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
10	chr11:16840000-16847400	Weak transcription	Esophagus	oesophagus
11	chr11:16842400-16847400	Weak transcription	Fetal Stomach	stomach
12	chr11:16842400-16848000	Weak transcription	Colonic Mucosa	Colon
13	chr11:16842400-16862200	Weak transcription	Fetal Kidney	kidney
14	chr11:16842600-16846800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:16842600-16847400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:16842600-16847400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:16842600-16847400	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:16842600-16847400	Weak transcription	Pancreas	Pancrea
19	chr11:16842600-16847400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:16842600-16847600	Weak transcription	Spleen	Spleen
21	chr11:16842600-16852600	Weak transcription	Placenta	Placenta
22	chr11:16842600-16853600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:16842600-16854200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:16842600-16855000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
26	chr11:16842800-16847400	Weak transcription	A549	lung
27	chr11:16842800-16862200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:16843000-16848000	Weak transcription	HSMMtube	muscle
29	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:16843200-16848000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:16844000-16862000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:16844400-16847600	Weak transcription	Right Atrium	heart
33	chr11:16844400-16847600	Weak transcription	Right Ventricle	heart
34	chr11:16844400-16848000	Weak transcription	Small Intestine	intestine
35	chr11:16844400-16861200	Weak transcription	HMEC	breast
36	chr11:16844600-16848400	Strong transcription	Fetal Intestine Large	intestine
37	chr11:16845000-16850600	Genic enhancers	Fetal Heart	heart
38	chr11:16845200-16847400	Weak transcription	Stomach Mucosa	stomach
39	chr11:16845800-16848400	Strong transcription	Fetal Intestine Small	intestine
40	chr11:16845800-16855200	Strong transcription	HepG2	liver
41	chr11:16846000-16847600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:16846000-16847600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:16846000-16847600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:16846000-16847800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:16846000-16848000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:16846000-16850600	Strong transcription	Liver	Liver
47	chr11:16846200-16847000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:16846200-16847200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:16846200-16849000	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr11:16846200-16849200	Strong transcription	Rectal Mucosa Donor 31	rectum

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