Variant report

Variant	rs16933515
Chromosome Location	chr11:16860124-16860125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11024078	1.00[EUR][1000 genomes]
rs11024091	1.00[EUR][1000 genomes]
rs11024092	1.00[EUR][1000 genomes]
rs12275536	1.00[EUR][1000 genomes]
rs12276960	1.00[EUR][1000 genomes]
rs12278736	1.00[EUR][1000 genomes]
rs12278828	1.00[EUR][1000 genomes]
rs12280548	1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16933529	0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933548	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs56721354	0.91[AFR][1000 genomes]
rs56918856	1.00[EUR][1000 genomes]
rs57289260	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	0.83[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6486315	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	1.00[EUR][1000 genomes]
rs7102357	1.00[EUR][1000 genomes]
rs7103382	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117859	1.00[EUR][1000 genomes]
rs7119994	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122601	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129494	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423200	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	1.00[EUR][1000 genomes]
rs73427252	1.00[EUR][1000 genomes]
rs73427255	1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7944088	1.00[EUR][1000 genomes]
rs7946609	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16836000-16861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
5	chr11:16842400-16862200	Weak transcription	Fetal Kidney	kidney
6	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
7	chr11:16842800-16862200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:16844000-16862000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:16844400-16861200	Weak transcription	HMEC	breast
11	chr11:16846600-16874000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:16847000-16864000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:16847000-16871200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:16847200-16871400	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:16847800-16865000	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:16847800-16871600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:16848000-16862400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:16848000-16863000	Weak transcription	Lung	lung
19	chr11:16848200-16861200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:16848200-16861400	Weak transcription	Ovary	ovary
21	chr11:16848200-16862400	Weak transcription	Esophagus	oesophagus
22	chr11:16848200-16863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:16848200-16871400	Weak transcription	Aorta	Aorta
24	chr11:16848200-16875200	Weak transcription	Right Ventricle	heart
25	chr11:16848400-16866600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:16848400-16878600	Weak transcription	Small Intestine	intestine
27	chr11:16848600-16868400	Weak transcription	HSMMtube	muscle
28	chr11:16849200-16861600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:16849800-16860200	Strong transcription	Fetal Intestine Large	intestine
30	chr11:16849800-16861200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:16849800-16865400	Strong transcription	Fetal Intestine Small	intestine
32	chr11:16849800-16871400	Weak transcription	Pancreas	Pancrea
33	chr11:16850400-16871200	Weak transcription	Fetal Brain Female	brain
34	chr11:16850600-16865600	Weak transcription	Psoas Muscle	Psoas
35	chr11:16850600-16871800	Weak transcription	Colonic Mucosa	Colon
36	chr11:16850800-16870600	Weak transcription	Fetal Brain Male	brain
37	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:16854000-16868000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:16855000-16861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:16855000-16863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:16855200-16861400	Weak transcription	Placenta	Placenta
42	chr11:16855200-16862600	Weak transcription	Left Ventricle	heart
43	chr11:16855200-16863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:16855200-16873000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:16855200-16877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:16855200-16878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:16855400-16861400	Weak transcription	Fetal Stomach	stomach
48	chr11:16855400-16862600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:16856200-16863200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:16856400-16861400	Weak transcription	HepG2	liver

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