Variant report

Variant	rs57818898
Chromosome Location	chr11:16994105-16994106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16993487..16995936-chr11:17022091..17024047,2	MCF-7	breast:
2	chr11:16993725..16995475-chr11:17022309..17023867,2	MCF-7	breast:
3	chr11:16980989..16984063-chr11:16991605..16994714,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11024078	1.00[EUR][1000 genomes]
rs11024091	1.00[EUR][1000 genomes]
rs11024092	1.00[EUR][1000 genomes]
rs12275536	1.00[EUR][1000 genomes]
rs12276960	1.00[EUR][1000 genomes]
rs12278736	1.00[EUR][1000 genomes]
rs12278828	1.00[EUR][1000 genomes]
rs12280548	1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[EUR][1000 genomes]
rs16933515	1.00[EUR][1000 genomes]
rs16933529	1.00[EUR][1000 genomes]
rs16933548	1.00[EUR][1000 genomes]
rs16933592	1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs56918856	1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs58540437	1.00[EUR][1000 genomes]
rs60553604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60977991	1.00[EUR][1000 genomes]
rs61129651	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	1.00[EUR][1000 genomes]
rs6486315	1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	1.00[EUR][1000 genomes]
rs7102357	1.00[EUR][1000 genomes]
rs7103382	1.00[EUR][1000 genomes]
rs7117859	1.00[EUR][1000 genomes]
rs7119994	1.00[EUR][1000 genomes]
rs7122601	1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[EUR][1000 genomes]
rs73425209	1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	1.00[EUR][1000 genomes]
rs73427252	1.00[EUR][1000 genomes]
rs73427255	1.00[EUR][1000 genomes]
rs73427263	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927866	1.00[EUR][1000 genomes]
rs7935333	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944088	1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16981800-17002800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:16982200-16999000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:16982200-17003800	Weak transcription	Right Ventricle	heart
4	chr11:16985200-16997600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:16985400-16997600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:16986800-16995000	Enhancers	Stomach Mucosa	stomach
7	chr11:16990000-16997400	Weak transcription	Lung	lung
8	chr11:16990000-16999000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:16990200-16998000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:16990200-16998000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:16990200-16999200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:16990800-16997400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16991000-16994400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:16991400-16998000	Weak transcription	Gastric	stomach
15	chr11:16991400-16999200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:16991400-17002800	Weak transcription	Right Atrium	heart
17	chr11:16991600-16994600	Weak transcription	Brain Anterior Caudate	brain
18	chr11:16991600-16997400	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:16991800-17001000	Weak transcription	Fetal Kidney	kidney
20	chr11:16991800-17001000	Weak transcription	HepG2	liver
21	chr11:16992000-16995000	Weak transcription	Pancreas	Pancrea
22	chr11:16992000-17001200	Weak transcription	Liver	Liver
23	chr11:16992200-17007400	Weak transcription	Colonic Mucosa	Colon
24	chr11:16992400-16998000	Weak transcription	Fetal Stomach	stomach
25	chr11:16992400-16998400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:16992800-16999000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:16993600-16995800	Strong transcription	Fetal Intestine Small	intestine
28	chr11:16993800-16994200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:16993800-16998400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:16993800-16999000	Weak transcription	Rectal Mucosa Donor 31	rectum

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