Variant report

Variant	rs73427255
Chromosome Location	chr11:16988589-16988590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16988453..16990354-chr11:17039773..17042138,2	MCF-7	breast:
2	chr11:16983360..16985149-chr11:16987896..16990823,2	MCF-7	breast:
3	chr11:16976807..16979737-chr11:16986276..16990868,5	MCF-7	breast:
4	chr11:16980630..16982721-chr11:16985840..16988789,2	MCF-7	breast:
5	chr11:16988302..16992482-chr11:17096821..17100863,4	MCF-7	breast:
6	chr11:16983037..16985172-chr11:16987078..16988742,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction
ENSG00000201403	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11024078	1.00[EUR][1000 genomes]
rs11024091	1.00[EUR][1000 genomes]
rs11024092	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12275536	1.00[EUR][1000 genomes]
rs12276960	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12278736	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12278828	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12280548	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[EUR][1000 genomes]
rs16933515	1.00[EUR][1000 genomes]
rs16933529	1.00[EUR][1000 genomes]
rs16933548	1.00[EUR][1000 genomes]
rs16933592	1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs56918856	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	1.00[EUR][1000 genomes]
rs6486315	1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	1.00[EUR][1000 genomes]
rs7102357	1.00[EUR][1000 genomes]
rs7103382	1.00[EUR][1000 genomes]
rs7117859	1.00[EUR][1000 genomes]
rs7119994	1.00[EUR][1000 genomes]
rs7122601	1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[EUR][1000 genomes]
rs73425209	1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73427252	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7944088	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
3	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
4	chr11:16981400-16989000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:16981800-17002800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:16982200-16999000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:16982200-17003800	Weak transcription	Right Ventricle	heart
8	chr11:16982600-16989000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:16983800-16988600	Weak transcription	HepG2	liver
10	chr11:16985200-16997600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:16985400-16997600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:16986000-16989600	Weak transcription	GM12878-XiMat	blood
13	chr11:16986800-16995000	Enhancers	Stomach Mucosa	stomach
14	chr11:16987000-16990400	Enhancers	Pancreas	Pancrea
15	chr11:16987600-16989600	Enhancers	Fetal Intestine Small	intestine
16	chr11:16987600-16990000	Enhancers	Colonic Mucosa	Colon
17	chr11:16987600-16990200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:16987800-16989800	Enhancers	Fetal Lung	lung
19	chr11:16987800-16990000	Enhancers	Fetal Kidney	kidney
20	chr11:16988000-16993800	Enhancers	Fetal Intestine Large	intestine
21	chr11:16988200-16992000	Enhancers	Liver	Liver
22	chr11:16988200-16993800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:16988400-16988600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:16988400-16988600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr11:16988400-16988600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr11:16988400-16988800	Weak transcription	Gastric	stomach
27	chr11:16988400-16988800	Weak transcription	Lung	lung
28	chr11:16988400-16989000	Enhancers	A549	lung
29	chr11:16988400-16989400	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr11:16988400-16991400	Enhancers	Sigmoid Colon	Sigmoid Colon

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