Variant report

Variant	rs16933592
Chromosome Location	chr11:16883369-16883370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16882424..16884951-chr11:16885090..16886860,2	MCF-7	breast:
2	chr11:16878376..16881248-chr11:16883308..16886375,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11024078	1.00[EUR][1000 genomes]
rs11024091	1.00[EUR][1000 genomes]
rs11024092	1.00[EUR][1000 genomes]
rs12275536	1.00[EUR][1000 genomes]
rs12276960	1.00[EUR][1000 genomes]
rs12278736	1.00[EUR][1000 genomes]
rs12278828	1.00[EUR][1000 genomes]
rs12280548	1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[EUR][1000 genomes]
rs16933515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs56918856	1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	1.00[EUR][1000 genomes]
rs6486315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	1.00[EUR][1000 genomes]
rs7102357	1.00[EUR][1000 genomes]
rs7103382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117859	1.00[EUR][1000 genomes]
rs7119994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	1.00[EUR][1000 genomes]
rs73427252	1.00[EUR][1000 genomes]
rs73427255	1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7944088	1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:16863800-16884800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
4	chr11:16867800-16885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
6	chr11:16872200-16884400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:16872600-16889600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:16872800-16883800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:16876000-16883800	Weak transcription	Fetal Brain Female	brain
10	chr11:16876200-16888400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:16876400-16883600	Weak transcription	Spleen	Spleen
12	chr11:16876600-16884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:16876600-16889800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:16876600-16890800	Weak transcription	Colonic Mucosa	Colon
15	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:16877800-16883800	Weak transcription	Brain Germinal Matrix	brain
17	chr11:16877800-16890000	Weak transcription	Lung	lung
18	chr11:16877800-16892200	Weak transcription	Fetal Stomach	stomach
19	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:16878000-16889400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:16878200-16883800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:16878400-16883400	Weak transcription	Brain Substantia Nigra	brain
23	chr11:16878800-16890000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:16879000-16883600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:16879000-16884200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:16879000-16887600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:16879200-16884000	Weak transcription	Liver	Liver
28	chr11:16879400-16885000	Enhancers	K562	blood
29	chr11:16880400-16883800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:16880400-16885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:16880400-16885800	Enhancers	Fetal Muscle Leg	muscle
32	chr11:16881000-16884600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:16881800-16883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:16881800-16885200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:16882200-16883400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:16882200-16883400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:16882200-16883600	Weak transcription	Right Ventricle	heart
38	chr11:16882200-16883800	Weak transcription	Right Atrium	heart
39	chr11:16882200-16884800	Enhancers	Brain Anterior Caudate	brain
40	chr11:16882200-16888400	Weak transcription	HMEC	breast
41	chr11:16882200-16888600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:16882400-16883400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:16882400-16883400	Weak transcription	Left Ventricle	heart
44	chr11:16882400-16883400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:16882400-16883600	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:16882400-16883600	Weak transcription	Placenta	Placenta
47	chr11:16882400-16883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:16882400-16884400	Weak transcription	Esophagus	oesophagus
49	chr11:16882400-16884800	Weak transcription	Psoas Muscle	Psoas
50	chr11:16882400-16889200	Weak transcription	HepG2	liver

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