Variant report

Variant	rs12275536
Chromosome Location	chr11:16969485-16969486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16968895..16971125-chr11:16971193..16973951,2	MCF-7	breast:
2	chr11:16966281..16969842-chr11:16976430..16978510,4	MCF-7	breast:
3	chr11:16967067..16971256-chr11:17030990..17035290,3	MCF-7	breast:
4	chr11:16961300..16963934-chr11:16968843..16971066,2	K562	blood:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11024078	1.00[EUR][1000 genomes]
rs11024091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024092	1.00[EUR][1000 genomes]
rs12276960	1.00[EUR][1000 genomes]
rs12278736	1.00[EUR][1000 genomes]
rs12278828	1.00[EUR][1000 genomes]
rs12280548	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[EUR][1000 genomes]
rs16933515	1.00[EUR][1000 genomes]
rs16933529	1.00[EUR][1000 genomes]
rs16933548	1.00[EUR][1000 genomes]
rs16933592	1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs56918856	1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	1.00[EUR][1000 genomes]
rs6486315	1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102357	1.00[EUR][1000 genomes]
rs7103382	1.00[EUR][1000 genomes]
rs7117859	1.00[EUR][1000 genomes]
rs7119994	1.00[EUR][1000 genomes]
rs7122601	1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[EUR][1000 genomes]
rs73425209	1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	1.00[EUR][1000 genomes]
rs73427252	1.00[EUR][1000 genomes]
rs73427255	1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7944088	1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16964200-16981400	Weak transcription	Gastric	stomach
4	chr11:16965400-16978200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:16967800-16971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:16968000-16970800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:16968000-16972400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:16968000-16977800	Weak transcription	Pancreas	Pancrea
9	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
10	chr11:16968200-16972400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:16968400-16971400	Weak transcription	Fetal Intestine Large	intestine
12	chr11:16968400-16975200	Weak transcription	Fetal Kidney	kidney
13	chr11:16968400-16978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:16968400-16980000	Weak transcription	Liver	Liver
15	chr11:16968600-16971000	Strong transcription	Fetal Intestine Small	intestine
16	chr11:16968600-16971800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:16968600-16975200	Weak transcription	HepG2	liver
18	chr11:16968600-16975400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:16968800-16971200	Weak transcription	Stomach Mucosa	stomach
20	chr11:16968800-16972000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:16968800-16977800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:16968800-16978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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