The 2.0 version of rSNPBase

Variant report

Variant rs12292955
Chromosome Location chr11:16892252-16892253
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:16863800-16892600 Weak transcription Fetal Kidney kidney
2 chr11:16872000-16895800 Weak transcription Aorta Aorta
3 chr11:16876800-16898600 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr11:16877800-16899600 Weak transcription Stomach Smooth Muscle stomach
5 chr11:16882400-16894800 Weak transcription Pancreas Pancrea
6 chr11:16882400-16895800 Weak transcription Gastric stomach
7 chr11:16882600-16898400 Weak transcription Ovary ovary
8 chr11:16884600-16897600 Weak transcription Brain Hippocampus Middle brain
9 chr11:16884800-16897600 Weak transcription Brain Anterior Caudate brain
10 chr11:16884800-16900000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr11:16885000-16900200 Weak transcription Stomach Mucosa stomach
12 chr11:16885200-16892400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr11:16885200-16894000 Weak transcription Left Ventricle heart
14 chr11:16885200-16894800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr11:16885200-16894800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr11:16885200-16902400 Weak transcription H1 Cell Line embryonic stem cell
17 chr11:16885400-16894800 Weak transcription Right Ventricle heart
18 chr11:16885400-16900800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr11:16885800-16892800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr11:16886800-16893000 Strong transcription Fetal Intestine Small intestine
21 chr11:16888800-16892800 Genic enhancers Fetal Heart heart
22 chr11:16889200-16892600 Weak transcription HMEC breast
23 chr11:16890000-16892800 Strong transcription Esophagus oesophagus
24 chr11:16890200-16895600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr11:16890200-16897600 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr11:16890400-16899000 Weak transcription Adipose Nuclei Adipose
27 chr11:16891000-16892800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr11:16891000-16893200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr11:16891000-16893600 Enhancers HSMMtube muscle
30 chr11:16891000-16894200 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr11:16891000-16900000 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr11:16891000-16900800 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr11:16891000-16901000 Weak transcription Lung lung
34 chr11:16891200-16904600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr11:16891600-16893000 Enhancers Placenta Amnion Placenta Amnion
36 chr11:16891600-16894000 Enhancers HSMM muscle
37 chr11:16891600-16897600 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr11:16891600-16903600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr11:16891800-16895600 Weak transcription HepG2 liver
40 chr11:16891800-16895800 Weak transcription Fetal Intestine Large intestine
41 chr11:16891800-16899200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr11:16892000-16896000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr11:16892000-16897400 Weak transcription Placenta Placenta
44 chr11:16892200-16893400 Enhancers Fetal Stomach stomach
45 chr11:16892200-16895600 Weak transcription Duodenum Mucosa Duodenum
46 chr11:16892200-16896200 Weak transcription Liver Liver

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Last update: Aug 31, 2015