Variant report

Variant	rs6486316
Chromosome Location	chr11:16898134-16898135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11024078	1.00[EUR][1000 genomes]
rs11024091	1.00[EUR][1000 genomes]
rs11024092	1.00[EUR][1000 genomes]
rs12275536	1.00[EUR][1000 genomes]
rs12276960	1.00[EUR][1000 genomes]
rs12278736	1.00[EUR][1000 genomes]
rs12278828	1.00[EUR][1000 genomes]
rs12280548	1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[EUR][1000 genomes]
rs16933515	1.00[EUR][1000 genomes]
rs16933529	1.00[EUR][1000 genomes]
rs16933548	1.00[EUR][1000 genomes]
rs16933592	1.00[EUR][1000 genomes]
rs16933661	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs4379815	0.83[AMR][1000 genomes]
rs56918856	1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486314	1.00[EUR][1000 genomes]
rs6486315	1.00[EUR][1000 genomes]
rs7102075	1.00[EUR][1000 genomes]
rs7102357	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103382	1.00[EUR][1000 genomes]
rs7117859	1.00[EUR][1000 genomes]
rs7119994	1.00[EUR][1000 genomes]
rs7122601	1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[EUR][1000 genomes]
rs73425209	1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425302	1.00[EUR][1000 genomes]
rs73427252	1.00[EUR][1000 genomes]
rs73427255	1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7944088	1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:16882600-16898400	Weak transcription	Ovary	ovary
4	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
6	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:16890400-16899000	Weak transcription	Adipose Nuclei	Adipose
9	chr11:16891000-16900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:16891000-16900800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:16891000-16901000	Weak transcription	Lung	lung
12	chr11:16891200-16904600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:16891600-16903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:16891800-16899200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:16892800-16898400	Enhancers	Fetal Heart	heart
16	chr11:16893400-16901600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:16893400-16902600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:16895000-16898200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:16895600-16898200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:16895600-16898400	Enhancers	HepG2	liver
21	chr11:16896000-16899400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:16896200-16898200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:16896400-16899400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:16896400-16901800	Weak transcription	Fetal Intestine Large	intestine
25	chr11:16896600-16902400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:16896600-16902600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:16896800-16898400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:16896800-16902600	Weak transcription	HSMMtube	muscle
29	chr11:16897000-16898600	Enhancers	Right Atrium	heart
30	chr11:16897200-16899800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:16897200-16900400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:16897400-16898200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:16897400-16898200	Enhancers	Left Ventricle	heart
34	chr11:16897400-16898200	Enhancers	Pancreas	Pancrea
35	chr11:16897400-16898400	Active TSS	Esophagus	oesophagus
36	chr11:16897400-16898400	Flanking Active TSS	HMEC	breast
37	chr11:16897400-16898600	Flanking Active TSS	NHEK	skin
38	chr11:16897400-16899400	Enhancers	Placenta	Placenta
39	chr11:16897400-16901200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:16897600-16898200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:16897600-16898200	Enhancers	Brain Hippocampus Middle	brain
42	chr11:16897600-16898800	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr11:16897600-16899400	Enhancers	Brain Substantia Nigra	brain
44	chr11:16897600-16901200	Enhancers	Brain Anterior Caudate	brain
45	chr11:16897800-16898200	Enhancers	Right Ventricle	heart
46	chr11:16897800-16898600	Enhancers	Brain Cingulate Gyrus	brain
47	chr11:16897800-16900400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:16897800-16901000	Weak transcription	Fetal Intestine Small	intestine
49	chr11:16898000-16898400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:16898000-16898600	Enhancers	H9 Cell Line	embryonic stem cell

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