Variant report

Variant	rs56723028
Chromosome Location	chr11:72046792-72046793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72045249..72047564-chr11:72053809..72055795,2	K562	blood:
2	chr11:72037535..72041965-chr11:72042144..72047706,5	K562	blood:
3	chr11:72037487..72041965-chr11:72042972..72047706,6	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58106576	1.00[EUR][1000 genomes]
rs58199047	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59514150	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:72025600-72054000	Weak transcription	GM12878-XiMat	blood
3	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:72027600-72060600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:72028400-72060800	Weak transcription	Gastric	stomach
6	chr11:72028600-72047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:72030600-72060200	Weak transcription	Adipose Nuclei	Adipose
8	chr11:72032800-72054600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:72033000-72075600	Weak transcription	A549	lung
10	chr11:72033200-72063800	Weak transcription	Aorta	Aorta
11	chr11:72034200-72047600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:72038200-72071200	Weak transcription	HMEC	breast
13	chr11:72038400-72049800	Weak transcription	NHDF-Ad	bronchial
14	chr11:72038400-72053600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:72038400-72076600	Weak transcription	Liver	Liver
16	chr11:72038800-72060600	Weak transcription	Esophagus	oesophagus
17	chr11:72039400-72060400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:72039600-72049400	Weak transcription	HSMMtube	muscle
19	chr11:72039800-72077400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:72040000-72048000	Weak transcription	NHEK	skin
21	chr11:72040000-72060200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:72040000-72070800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:72040400-72046800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:72040400-72047000	Weak transcription	Fetal Stomach	stomach
25	chr11:72040400-72047600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:72040400-72049600	Weak transcription	Spleen	Spleen
27	chr11:72040400-72053800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:72040400-72060600	Weak transcription	Ovary	ovary
29	chr11:72040400-72069400	Weak transcription	Fetal Brain Female	brain
30	chr11:72040600-72047800	Weak transcription	Pancreas	Pancrea
31	chr11:72040800-72047000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:72040800-72070800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:72041000-72060200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:72041200-72047000	Weak transcription	Placenta	Placenta
35	chr11:72041200-72054200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:72041400-72049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:72041400-72064600	Weak transcription	Hela-S3	cervix
38	chr11:72041600-72047200	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:72041600-72050200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:72041600-72060600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:72041800-72049200	Weak transcription	Left Ventricle	heart
42	chr11:72041800-72049600	Weak transcription	Dnd41	blood
43	chr11:72041800-72060600	Weak transcription	Psoas Muscle	Psoas
44	chr11:72041800-72063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:72041800-72067400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:72041800-72072200	Weak transcription	HUVEC	blood vessel
47	chr11:72041800-72076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:72042000-72059800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:72043200-72076600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:72043800-72046800	Weak transcription	Primary B cells from cord blood	blood

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