Variant report

Variant	rs56724202
Chromosome Location	chr16:81877730-81877731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7206437	1.00[AMR][1000 genomes]
rs74029248	1.00[AMR][1000 genomes]
rs74029255	1.00[AMR][1000 genomes]
rs74029257	1.00[AMR][1000 genomes]
rs8048389	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81858800-81878800	Weak transcription	Fetal Intestine Small	intestine
2	chr16:81866800-81898600	Weak transcription	Right Atrium	heart
3	chr16:81868200-81886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr16:81871200-81897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr16:81874400-81879200	Weak transcription	Esophagus	oesophagus
6	chr16:81874400-81879600	Weak transcription	Pancreas	Pancrea
7	chr16:81876200-81877800	Enhancers	Primary B cells from peripheral blood	blood
8	chr16:81876200-81878400	Enhancers	Primary B cells from cord blood	blood
9	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr16:81876400-81878200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:81876400-81878400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr16:81876400-81881800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr16:81876400-81882800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr16:81876400-81889400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr16:81876600-81879200	Weak transcription	Lung	lung
16	chr16:81876800-81877800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr16:81877000-81879600	Weak transcription	Spleen	Spleen
18	chr16:81877000-81889200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr16:81877200-81878200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr16:81877200-81879400	Genic enhancers	GM12878-XiMat	blood
21	chr16:81877400-81878200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr16:81877400-81878400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr16:81877400-81879600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr16:81877600-81879000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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