Variant report

Variant	rs74029255
Chromosome Location	chr16:81880512-81880513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81868079..81870881-chr16:81878026..81880776,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56724202	1.00[AMR][1000 genomes]
rs7206437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74029248	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74029257	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8048389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81866800-81898600	Weak transcription	Right Atrium	heart
2	chr16:81868200-81886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:81871200-81897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:81876400-81881800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:81876400-81882800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr16:81876400-81889400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr16:81877000-81889200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:81877800-81890400	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr16:81878800-81881000	Strong transcription	Primary B cells from cord blood	blood
11	chr16:81879400-81888000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr16:81879800-81888000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr16:81880000-81880800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr16:81880000-81887600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr16:81880000-81889000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr16:81880000-81889200	Weak transcription	Lung	lung
17	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
18	chr16:81880200-81885200	Weak transcription	Spleen	Spleen
19	chr16:81880200-81885800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr16:81880400-81883400	Weak transcription	GM12878-XiMat	blood
21	chr16:81880400-81888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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