Variant report

Variant rs56725488
Chromosome Location chr1:179890180-179890181
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179853000-179890400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:179853200-179890800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:179860200-179890200 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:179867400-179897200 Weak transcription Stomach Mucosa stomach
5 chr1:179868200-179891600 Strong transcription Primary B cells from peripheral blood blood
6 chr1:179868200-179891800 Strong transcription Primary T cells fromperipheralblood blood
7 chr1:179868400-179890600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:179868400-179890800 Strong transcription Dnd41 blood
9 chr1:179868600-179891600 Strong transcription Primary monocytes fromperipheralblood blood
10 chr1:179868600-179892000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr1:179869200-179891600 Strong transcription Primary neutrophils fromperipheralblood blood
12 chr1:179869400-179891400 Strong transcription Liver Liver
13 chr1:179870000-179890400 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr1:179871200-179891000 Strong transcription Duodenum Smooth Muscle Duodenum
15 chr1:179873400-179891400 Strong transcription Monocytes-CD14+_RO01746 blood
16 chr1:179875200-179891800 Strong transcription Primary B cells from cord blood blood
17 chr1:179876000-179891200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:179877000-179891600 Strong transcription Rectal Mucosa Donor 29 rectum
19 chr1:179879600-179890800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:179880800-179891000 Strong transcription Skeletal Muscle Female skeletal muscle
21 chr1:179881000-179891400 Strong transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:179881800-179891200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:179882000-179891600 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr1:179882600-179890800 Strong transcription Colon Smooth Muscle Colon
25 chr1:179884600-179890400 Strong transcription Fetal Stomach stomach
26 chr1:179886400-179891600 Strong transcription Duodenum Mucosa Duodenum
27 chr1:179886800-179891200 Strong transcription GM12878-XiMat blood
28 chr1:179887200-179893400 Weak transcription Pancreas Pancrea
29 chr1:179887200-179897200 Weak transcription Fetal Intestine Small intestine
30 chr1:179887400-179890600 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr1:179887400-179890600 Weak transcription Thymus Thymus
32 chr1:179887400-179890800 Weak transcription H9 Cell Line embryonic stem cell
33 chr1:179887400-179891400 Weak transcription Psoas Muscle Psoas
34 chr1:179887400-179891600 Weak transcription Spleen Spleen
35 chr1:179887400-179892800 Weak transcription Gastric stomach
36 chr1:179887400-179894600 Weak transcription HSMMtube muscle
37 chr1:179887400-179897200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:179887400-179897600 Weak transcription Aorta Aorta
39 chr1:179887400-179898600 Weak transcription Right Ventricle heart
40 chr1:179887400-179899200 Weak transcription Small Intestine intestine
41 chr1:179887400-179900600 Weak transcription Ovary ovary
42 chr1:179887400-179901600 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr1:179887600-179890200 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:179887600-179895200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:179887600-179899400 Weak transcription K562 blood
46 chr1:179887800-179892000 Weak transcription Fetal Heart heart
47 chr1:179887800-179892200 Weak transcription Colonic Mucosa Colon
48 chr1:179887800-179893000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr1:179887800-179899400 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:179888000-179890400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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