Variant report

Variant	rs56726277
Chromosome Location	chr15:35374870-35374871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16960339	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16960342	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2279068	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28588970	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58196467	0.84[ASN][1000 genomes]
rs58813654	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61107991	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61480765	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7165276	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7175331	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7183214	0.85[ASN][1000 genomes]
rs73379461	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73379462	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9944255	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv569155	chr15:35371869-35408386	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv977700	chr15:35373541-35377380	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35357000-35379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:35373000-35380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:35373600-35375200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:35374000-35375000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr15:35374400-35375200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:35374400-35375200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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