Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs4640696	0.91[AMR][1000 genomes]
rs4642280	0.91[AMR][1000 genomes]
rs56737906	0.91[AMR][1000 genomes]
rs57192573	0.83[AMR][1000 genomes]
rs57313433	0.83[AMR][1000 genomes]
rs57393120	0.91[AMR][1000 genomes]
rs57495327	0.91[AMR][1000 genomes]
rs58123642	0.91[AMR][1000 genomes]
rs58204387	1.00[AMR][1000 genomes]
rs58413598	0.91[AMR][1000 genomes]
rs58608230	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58621029	0.91[AMR][1000 genomes]
rs58665063	0.91[AMR][1000 genomes]
rs59325906	0.91[AMR][1000 genomes]
rs59347828	0.83[AMR][1000 genomes]
rs59372045	0.91[AMR][1000 genomes]
rs59505260	0.91[AMR][1000 genomes]
rs59946847	0.91[AMR][1000 genomes]
rs60025474	0.83[AMR][1000 genomes]
rs60324820	0.91[AMR][1000 genomes]
rs60655770	0.91[AMR][1000 genomes]
rs60822706	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61109141	0.91[AMR][1000 genomes]
rs6811641	0.91[AMR][1000 genomes]
rs6816114	0.91[AMR][1000 genomes]
rs6817207	0.91[AMR][1000 genomes]
rs6817781	0.91[AMR][1000 genomes]
rs6834816	0.91[AMR][1000 genomes]
rs6834831	0.91[AMR][1000 genomes]
rs6835449	0.91[AMR][1000 genomes]
rs6839693	0.91[AMR][1000 genomes]
rs6850929	0.91[AMR][1000 genomes]
rs6856043	0.91[AMR][1000 genomes]
rs6857338	0.91[AMR][1000 genomes]
rs7658040	0.91[AMR][1000 genomes]
rs7686832	0.91[AMR][1000 genomes]
rs7687644	0.91[AMR][1000 genomes]
rs9759648	0.91[AMR][1000 genomes]
rs9759655	0.91[AMR][1000 genomes]
rs9762431	0.91[AMR][1000 genomes]
rs9762466	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:62607200-62609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:62607600-62609000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:62607800-62609400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62607800-62609400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:62608000-62609400	Weak transcription	Fetal Stomach	stomach
8	chr4:62608200-62611000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr4:62608200-62611800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr4:62608200-62612800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr4:62608400-62611000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr4:62608600-62609000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:62608600-62609800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:62608800-62610400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:62608800-62611000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell

Quick Search: