Variant report

Variant	rs60822706
Chromosome Location	chr4:62622868-62622869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs4640696	0.91[AMR][1000 genomes]
rs4642280	0.91[AMR][1000 genomes]
rs56727277	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56737906	0.91[AMR][1000 genomes]
rs57192573	0.83[AMR][1000 genomes]
rs57313433	0.83[AMR][1000 genomes]
rs57393120	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57495327	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57754511	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58123642	0.91[AMR][1000 genomes]
rs58204387	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58413598	0.91[AMR][1000 genomes]
rs58608230	0.91[AMR][1000 genomes]
rs58621029	0.91[AMR][1000 genomes]
rs58665063	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59325906	0.91[AMR][1000 genomes]
rs59347828	0.83[AMR][1000 genomes]
rs59372045	0.91[AMR][1000 genomes]
rs59505260	0.91[AMR][1000 genomes]
rs59946847	0.91[AMR][1000 genomes]
rs60025474	0.83[AMR][1000 genomes]
rs60324820	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60655770	0.91[AMR][1000 genomes]
rs61109141	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6811641	0.91[AMR][1000 genomes]
rs6816114	0.91[AMR][1000 genomes]
rs6817207	0.91[AMR][1000 genomes]
rs6817781	0.91[AMR][1000 genomes]
rs6834816	0.91[AMR][1000 genomes]
rs6834831	0.91[AMR][1000 genomes]
rs6835449	0.91[AMR][1000 genomes]
rs6839693	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6850929	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6856043	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6857338	0.91[AMR][1000 genomes]
rs7658040	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7686832	0.91[AMR][1000 genomes]
rs7687644	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9759648	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9759655	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9762431	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9762466	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62610400-62625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:62616800-62625400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:62618600-62625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:62620600-62625400	Weak transcription	H9 Cell Line	embryonic stem cell

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