Variant report
| Variant | rs56729613 |
|---|---|
| Chromosome Location | chr1:227674857-227674858 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000237193 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs57165236 | 1.00[AMR][1000 genomes] |
| rs57337697 | 1.00[AMR][1000 genomes] |
| rs59560829 | 1.00[AMR][1000 genomes] |
| rs59738832 | 1.00[AMR][1000 genomes] |
| rs60397612 | 1.00[AMR][1000 genomes] |
| rs60790626 | 1.00[AMR][1000 genomes] |
| rs61574768 | 1.00[AMR][1000 genomes] |
| rs61744724 | 1.00[AMR][1000 genomes] |
| rs6662722 | 1.00[AMR][1000 genomes] |
| rs6674377 | 1.00[AMR][1000 genomes] |
| rs73090918 | 1.00[AMR][1000 genomes] |
| rs73090923 | 1.00[AMR][1000 genomes] |
| rs73090939 | 1.00[AMR][1000 genomes] |
| rs7526007 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534002 | chr1:227315186-228047108 | Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 54 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003278 | chr1:227563126-227678464 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv2753828 | chr1:227670265-227791265 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
