Variant report
| Variant | rs6662722 |
|---|---|
| Chromosome Location | chr1:227594052-227594053 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ESR1 | chr1:227593991-227594422 | T-47D | breast: | n/a | n/a |
| 2 | ESR1 | chr1:227593951-227594502 | T-47D | breast: | n/a | n/a |
| 3 | ESR1 | chr1:227594018-227594386 | T-47D | breast: | n/a | n/a |
| 4 | ESR1 | chr1:227593992-227594491 | T-47D | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234277 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs56729613 | 1.00[AMR][1000 genomes] |
| rs57165236 | 1.00[AMR][1000 genomes] |
| rs57337697 | 1.00[AMR][1000 genomes] |
| rs59560829 | 1.00[AMR][1000 genomes] |
| rs59738832 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61574768 | 1.00[AMR][1000 genomes] |
| rs6674377 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73090918 | 1.00[AMR][1000 genomes] |
| rs73090923 | 1.00[AMR][1000 genomes] |
| rs73090939 | 1.00[AMR][1000 genomes] |
| rs7526007 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534002 | chr1:227315186-228047108 | Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 54 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001353 | chr1:227474785-227660691 | Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003278 | chr1:227563126-227678464 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv873243 | chr1:227581017-227617519 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
