Variant report

Variant	rs56736206
Chromosome Location	chr10:4119721-4119722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4116566..4118827-chr10:4119100..4121820,2	K562	blood:
2	chr10:4107010..4110673-chr10:4118999..4120974,3	K562	blood:
3	chr10:4108012..4110673-chr10:4118999..4120974,2	K562	blood:
4	chr10:4117313..4119775-chr10:4122866..4124506,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1E2-11	chr10:4119551-4121205	NONHSAT011077

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12246141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247512	1.00[AMR][1000 genomes]
rs12254750	1.00[AMR][1000 genomes]
rs12266996	1.00[AMR][1000 genomes]
rs12268483	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57941192	1.00[AMR][1000 genomes]
rs60080072	1.00[AMR][1000 genomes]
rs6601799	1.00[AMR][1000 genomes]
rs73589514	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4112000-4122000	Weak transcription	Spleen	Spleen
2	chr10:4112000-4124600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:4115400-4123400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:4116200-4124000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:4117000-4122000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:4117000-4124000	Weak transcription	HSMMtube	muscle
7	chr10:4117000-4125400	Weak transcription	Psoas Muscle	Psoas
8	chr10:4117000-4125600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:4117200-4122600	Weak transcription	Right Ventricle	heart
10	chr10:4117200-4124000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:4117200-4125400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:4117200-4126200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:4117400-4121800	Weak transcription	HUVEC	blood vessel
14	chr10:4117400-4122600	Weak transcription	Adipose Nuclei	Adipose
15	chr10:4117400-4123800	Weak transcription	Right Atrium	heart
16	chr10:4117400-4123800	Weak transcription	Small Intestine	intestine
17	chr10:4117400-4124000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:4117600-4121400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:4117800-4119800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:4117800-4120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:4117800-4121400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:4117800-4122200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:4117800-4123600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:4117800-4123800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:4117800-4123800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:4117800-4123800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:4117800-4123800	Weak transcription	Left Ventricle	heart
28	chr10:4117800-4124200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:4118000-4119800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:4118000-4121400	Weak transcription	Primary T cells from cord blood	blood
31	chr10:4118000-4121600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:4118000-4122200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:4118000-4123600	Weak transcription	Fetal Heart	heart
34	chr10:4118000-4126000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:4118000-4126000	Weak transcription	NHEK	skin
36	chr10:4118200-4121400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:4118200-4122000	Weak transcription	Dnd41	blood
38	chr10:4119200-4120000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:4119200-4120000	Weak transcription	Fetal Thymus	thymus
40	chr10:4119200-4124200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr10:4119400-4119800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:4119400-4119800	Enhancers	NHDF-Ad	bronchial
43	chr10:4119600-4123400	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:4119600-4123800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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