Variant report

Variant	rs6601799
Chromosome Location	chr10:4106958-4106959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4104934..4107897-chr10:4109686..4112440,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12246141	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254750	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266996	0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268483	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56736206	1.00[AMR][1000 genomes]
rs57941192	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60080072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589514	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart
2	chr10:4101000-4110000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:4102400-4109200	Weak transcription	Spleen	Spleen
4	chr10:4102600-4109400	Weak transcription	Thymus	Thymus
5	chr10:4104000-4109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:4104000-4109200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:4104200-4108600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:4104200-4108600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:4104200-4108800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:4104200-4109000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:4104200-4109000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:4104200-4109000	Weak transcription	Fetal Thymus	thymus
13	chr10:4104200-4109200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:4104200-4109200	Weak transcription	Placenta	Placenta
15	chr10:4104200-4109400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:4104200-4109400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:4104200-4109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:4104200-4111800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:4104400-4109200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:4104400-4109200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:4104400-4109400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:4104400-4117200	Weak transcription	Small Intestine	intestine
23	chr10:4104600-4108600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:4104600-4109200	Weak transcription	NHDF-Ad	bronchial
25	chr10:4104600-4109400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:4104600-4109800	Weak transcription	Fetal Lung	lung
27	chr10:4104600-4111600	Weak transcription	Primary T cells from cord blood	blood
28	chr10:4104800-4109200	Weak transcription	Right Atrium	heart
29	chr10:4104800-4109400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:4104800-4109400	Weak transcription	HUVEC	blood vessel
31	chr10:4104800-4111400	Weak transcription	HSMMtube	muscle
32	chr10:4105000-4108800	Weak transcription	Stomach Mucosa	stomach
33	chr10:4105000-4109000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:4105000-4109200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:4105000-4109200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:4105000-4109200	Weak transcription	Osteobl	bone
37	chr10:4105000-4109400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:4105000-4109600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:4105000-4110000	Weak transcription	NHLF	lung
40	chr10:4105000-4111600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:4105200-4109000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr10:4105200-4109200	Weak transcription	Hela-S3	cervix
43	chr10:4105600-4109000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:4105600-4109800	Weak transcription	Lung	lung
45	chr10:4105800-4111400	Weak transcription	Esophagus	oesophagus
46	chr10:4106200-4107200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:4106200-4108800	Weak transcription	Colonic Mucosa	Colon
48	chr10:4106400-4107800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:4106400-4108600	Weak transcription	Fetal Intestine Large	intestine
50	chr10:4106800-4107200	Weak transcription	Rectal Mucosa Donor 29	rectum

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