Variant report

Variant	rs56737198
Chromosome Location	chr2:21315608-21315609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17041785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17041787	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17041788	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55901050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60025427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920519	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920525	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920530	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21313800-21316400	Enhancers	Liver	Liver
3	chr2:21313800-21316800	Enhancers	Fetal Intestine Small	intestine
4	chr2:21315200-21315800	Flanking Active TSS	HepG2	liver
5	chr2:21315200-21316000	Enhancers	Duodenum Mucosa	Duodenum
6	chr2:21315400-21315800	Enhancers	Fetal Intestine Large	intestine
7	chr2:21315400-21316000	Enhancers	Adipose Nuclei	Adipose
8	chr2:21315400-21316200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links