Variant report

Variant	rs73920529
Chromosome Location	chr2:21317646-21317647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17041785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17041787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17041788	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55901050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60025427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920458	0.80[AFR][1000 genomes]
rs73920518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21315800-21318200	Weak transcription	Fetal Intestine Large	intestine
3	chr2:21315800-21320000	Enhancers	HepG2	liver
4	chr2:21315800-21326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:21316000-21319200	Weak transcription	Adipose Nuclei	Adipose
6	chr2:21316000-21319400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:21316800-21318200	Weak transcription	Fetal Intestine Small	intestine
8	chr2:21317600-21320000	Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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