Variant report

Variant	rs73920458
Chromosome Location	chr2:21334581-21334582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12720761	1.00[AMR][1000 genomes]
rs1594286	0.86[AFR][1000 genomes]
rs17041785	0.85[AFR][1000 genomes]
rs17041787	0.85[AFR][1000 genomes]
rs17041788	0.85[AFR][1000 genomes]
rs55899854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55901050	0.80[AFR][1000 genomes]
rs56300790	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362198	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370608	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57300286	1.00[AMR][1000 genomes]
rs58233853	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58480104	1.00[AMR][1000 genomes]
rs59771269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59952985	1.00[AMR][1000 genomes]
rs60025427	0.80[AFR][1000 genomes]
rs73918012	1.00[AMR][1000 genomes]
rs73918091	1.00[AMR][1000 genomes]
rs73918094	1.00[AMR][1000 genomes]
rs73918095	1.00[AMR][1000 genomes]
rs73918098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918099	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918100	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918101	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919803	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919804	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919805	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919806	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919807	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919813	0.86[AFR][1000 genomes]
rs73920518	0.80[AFR][1000 genomes]
rs73920519	0.80[AFR][1000 genomes]
rs73920525	0.80[AFR][1000 genomes]
rs73920526	0.80[AFR][1000 genomes]
rs73920527	0.80[AFR][1000 genomes]
rs73920529	0.80[AFR][1000 genomes]
rs73920530	0.85[AFR][1000 genomes]
rs73921327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21331800-21340600	Weak transcription	Liver	Liver

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