Variant report

Variant	rs1594286
Chromosome Location	chr2:21297193-21297194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12720811	1.00[AMR][1000 genomes]
rs55899854	0.97[AFR][1000 genomes]
rs56300790	0.97[AFR][1000 genomes]
rs56362198	0.97[AFR][1000 genomes]
rs56370608	0.97[AFR][1000 genomes]
rs56998975	1.00[AMR][1000 genomes]
rs58233853	0.97[AFR][1000 genomes]
rs59771269	0.97[AFR][1000 genomes]
rs60892813	1.00[AMR][1000 genomes]
rs70939078	1.00[AMR][1000 genomes]
rs73918098	0.97[AFR][1000 genomes]
rs73918099	0.97[AFR][1000 genomes]
rs73918100	0.97[AFR][1000 genomes]
rs73918101	0.97[AFR][1000 genomes]
rs73918102	0.97[AFR][1000 genomes]
rs73919803	0.97[AFR][1000 genomes]
rs73919804	0.97[AFR][1000 genomes]
rs73919805	0.97[AFR][1000 genomes]
rs73919806	0.97[AFR][1000 genomes]
rs73919807	0.97[AFR][1000 genomes]
rs73919810	0.97[AFR][1000 genomes]
rs73919813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920458	0.86[AFR][1000 genomes]
rs73920872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21296400-21297400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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