Variant report

Variant	rs58233853
Chromosome Location	chr2:21293229-21293230
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12720761	1.00[AMR][1000 genomes]
rs1594286	0.97[AFR][1000 genomes]
rs55899854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56300790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57300286	1.00[AMR][1000 genomes]
rs58480104	1.00[AMR][1000 genomes]
rs59771269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59952985	1.00[AMR][1000 genomes]
rs73918012	1.00[AMR][1000 genomes]
rs73918091	1.00[AMR][1000 genomes]
rs73918094	1.00[AMR][1000 genomes]
rs73918095	1.00[AMR][1000 genomes]
rs73918098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919813	0.97[AFR][1000 genomes]
rs73920458	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21290000-21293600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:21291600-21293400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:21292600-21294400	Enhancers	Fetal Intestine Large	intestine
4	chr2:21292600-21295200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:21292800-21293800	Enhancers	Liver	Liver
6	chr2:21292800-21294400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21292800-21294400	Enhancers	Primary hematopoietic stem cells	blood
8	chr2:21292800-21294400	Enhancers	Fetal Intestine Small	intestine
9	chr2:21292800-21294400	Enhancers	HUVEC	blood vessel
10	chr2:21292800-21294600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:21292800-21294600	Flanking Active TSS	HepG2	liver
12	chr2:21293000-21293800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr2:21293200-21293600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:21293200-21293600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:21293200-21294000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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