Variant report

Variant	rs59952985
Chromosome Location	chr2:21275049-21275050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12720761	1.00[AMR][1000 genomes]
rs55899854	1.00[AMR][1000 genomes]
rs56300790	1.00[AMR][1000 genomes]
rs56362198	1.00[AMR][1000 genomes]
rs56370608	1.00[AMR][1000 genomes]
rs57300286	1.00[AMR][1000 genomes]
rs58233853	1.00[AMR][1000 genomes]
rs58480104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59771269	1.00[AMR][1000 genomes]
rs73918012	1.00[AMR][1000 genomes]
rs73918091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918094	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918095	1.00[AMR][1000 genomes]
rs73918098	1.00[AMR][1000 genomes]
rs73918099	1.00[AMR][1000 genomes]
rs73918100	1.00[AMR][1000 genomes]
rs73918101	1.00[AMR][1000 genomes]
rs73918102	1.00[AMR][1000 genomes]
rs73919803	1.00[AMR][1000 genomes]
rs73919804	1.00[AMR][1000 genomes]
rs73919805	1.00[AMR][1000 genomes]
rs73919806	1.00[AMR][1000 genomes]
rs73919807	1.00[AMR][1000 genomes]
rs73919810	1.00[AMR][1000 genomes]
rs73920458	1.00[AMR][1000 genomes]
rs73921327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21270600-21276000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:21270600-21276400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:21271000-21276200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:21271000-21276400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:21271000-21276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:21271200-21275800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:21271200-21279000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:21274400-21278800	Enhancers	HepG2	liver
9	chr2:21275000-21275400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:21275000-21275800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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