Variant report
| Variant | rs73918094 |
|---|---|
| Chromosome Location | chr2:21287341-21287342 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:20852272..20854551-chr2:21285830..21287375,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12720761 | 1.00[AMR][1000 genomes] |
| rs55899854 | 1.00[AMR][1000 genomes] |
| rs56300790 | 1.00[AMR][1000 genomes] |
| rs56362198 | 1.00[AMR][1000 genomes] |
| rs56370608 | 1.00[AMR][1000 genomes] |
| rs57300286 | 1.00[AMR][1000 genomes] |
| rs58233853 | 1.00[AMR][1000 genomes] |
| rs58480104 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59771269 | 1.00[AMR][1000 genomes] |
| rs59952985 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73918012 | 1.00[AMR][1000 genomes] |
| rs73918091 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73918095 | 1.00[AMR][1000 genomes] |
| rs73918098 | 1.00[AMR][1000 genomes] |
| rs73918099 | 1.00[AMR][1000 genomes] |
| rs73918100 | 1.00[AMR][1000 genomes] |
| rs73918101 | 1.00[AMR][1000 genomes] |
| rs73918102 | 1.00[AMR][1000 genomes] |
| rs73919803 | 1.00[AMR][1000 genomes] |
| rs73919804 | 1.00[AMR][1000 genomes] |
| rs73919805 | 1.00[AMR][1000 genomes] |
| rs73919806 | 1.00[AMR][1000 genomes] |
| rs73919807 | 1.00[AMR][1000 genomes] |
| rs73919810 | 1.00[AMR][1000 genomes] |
| rs73920458 | 1.00[AMR][1000 genomes] |
| rs73921327 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873728 | chr2:21250914-21460786 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21284800-21288400 | Weak transcription | HepG2 | liver |
