Variant report

Variant	rs73921327
Chromosome Location	chr2:21130906-21130907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12720761	1.00[AMR][1000 genomes]
rs55899854	1.00[AMR][1000 genomes]
rs56300790	1.00[AMR][1000 genomes]
rs56362198	1.00[AMR][1000 genomes]
rs56370608	1.00[AMR][1000 genomes]
rs58233853	1.00[AMR][1000 genomes]
rs58480104	1.00[AMR][1000 genomes]
rs59771269	1.00[AMR][1000 genomes]
rs59952985	1.00[AMR][1000 genomes]
rs73918012	1.00[AMR][1000 genomes]
rs73918091	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918094	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918095	1.00[AMR][1000 genomes]
rs73918098	1.00[AMR][1000 genomes]
rs73918099	1.00[AMR][1000 genomes]
rs73918100	1.00[AMR][1000 genomes]
rs73918101	1.00[AMR][1000 genomes]
rs73918102	1.00[AMR][1000 genomes]
rs73919803	1.00[AMR][1000 genomes]
rs73919804	1.00[AMR][1000 genomes]
rs73919805	1.00[AMR][1000 genomes]
rs73919806	1.00[AMR][1000 genomes]
rs73919807	1.00[AMR][1000 genomes]
rs73919810	1.00[AMR][1000 genomes]
rs73920458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21129600-21133000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:21129800-21133400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:21130000-21131600	Enhancers	HMEC	breast
4	chr2:21130000-21131800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:21130000-21135800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:21130200-21131600	Enhancers	NHEK	skin
7	chr2:21130200-21133400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:21130400-21131000	Enhancers	HepG2	liver
9	chr2:21130400-21131400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:21130400-21131600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:21130400-21131600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:21130400-21131800	Enhancers	HSMMtube	muscle
13	chr2:21130600-21131000	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr2:21130600-21131400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:21130600-21131400	Enhancers	Colon Smooth Muscle	Colon
16	chr2:21130600-21131400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr2:21130600-21131400	Enhancers	HSMM	muscle
18	chr2:21130600-21131400	Enhancers	NHDF-Ad	bronchial
19	chr2:21130600-21131600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:21130600-21131600	Enhancers	Osteobl	bone
21	chr2:21130600-21132200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:21130800-21131200	Enhancers	NH-A	brain
23	chr2:21130800-21131400	Enhancers	Ovary	ovary
24	chr2:21130800-21131600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:21130800-21132400	Enhancers	Spleen	Spleen

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