Variant report

Variant	rs56739677
Chromosome Location	chr3:141746084-141746085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141746024..141748965-chr3:160116774..160118286,2	K562	blood:
2	chr3:141724450..141726280-chr3:141745104..141746996,2	K562	blood:

Variant related genes	Relation type
ENSG00000068885	Chromatin interaction
ENSG00000113810	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11569181	0.84[AFR][1000 genomes]
rs16852046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv877553	chr3:141732321-141786073	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877554	chr3:141735532-141781890	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv877555	chr3:141740076-141791408	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141682800-141746200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:141683800-141746600	Weak transcription	Lung	lung
3	chr3:141706400-141746200	Weak transcription	Fetal Lung	lung
4	chr3:141720200-141746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:141728200-141746200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:141733200-141746200	Weak transcription	Adipose Nuclei	Adipose
7	chr3:141733400-141746600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:141733600-141747200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:141734600-141746200	Weak transcription	NH-A	brain
10	chr3:141735000-141746200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:141735800-141746200	Weak transcription	Right Ventricle	heart
12	chr3:141737800-141746200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:141739000-141746200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:141739000-141746400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:141739200-141747200	Weak transcription	Small Intestine	intestine
16	chr3:141739400-141746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:141739800-141746200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:141739800-141746200	Weak transcription	Left Ventricle	heart
19	chr3:141739800-141746200	Weak transcription	Right Atrium	heart
20	chr3:141739800-141746600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:141740200-141746200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:141740400-141746400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:141741400-141746400	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:141741600-141746200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr3:141741600-141746200	Weak transcription	Fetal Intestine Large	intestine
26	chr3:141741800-141746200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:141743800-141746200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:141744000-141747800	Active TSS	Thymus	Thymus
29	chr3:141744800-141748200	Active TSS	K562	blood
30	chr3:141745000-141746200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:141745000-141746200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:141745000-141747600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:141745200-141746200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:141745200-141746400	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr3:141745200-141747800	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr3:141745200-141747800	Active TSS	Fetal Thymus	thymus
37	chr3:141745200-141748000	Active TSS	GM12878-XiMat	blood
38	chr3:141745400-141746200	Enhancers	Primary B cells from cord blood	blood
39	chr3:141745400-141746200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:141745400-141746200	Enhancers	NHEK	skin
41	chr3:141745400-141746400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr3:141745400-141746400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr3:141745400-141747600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:141745400-141747600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:141745400-141747600	Active TSS	Stomach Smooth Muscle	stomach
46	chr3:141745600-141746200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:141745600-141746200	Enhancers	Fetal Intestine Small	intestine
48	chr3:141745600-141746200	Enhancers	HUVEC	blood vessel
49	chr3:141745600-141746400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr3:141745600-141746600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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