The 2.0 version of rSNPBase

Variant report

Variant rs56740822
Chromosome Location chr1:45523728-45523729
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:45481200-45527400 Weak transcription Left Ventricle heart
3 chr1:45482000-45523800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:45497400-45525400 Weak transcription Gastric stomach
5 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
6 chr1:45501800-45527000 Weak transcription Fetal Brain Male brain
7 chr1:45502000-45523800 Weak transcription Brain Cingulate Gyrus brain
8 chr1:45504200-45524200 Weak transcription Esophagus oesophagus
9 chr1:45504400-45524000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:45505000-45526000 Weak transcription Fetal Stomach stomach
11 chr1:45507600-45527000 Weak transcription Fetal Kidney kidney
12 chr1:45509000-45523800 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:45509000-45524000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr1:45509600-45526200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:45512400-45523800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr1:45513600-45525400 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr1:45513600-45526200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:45517000-45525600 Weak transcription Small Intestine intestine
19 chr1:45517400-45526200 Weak transcription Primary hematopoietic stem cells blood
20 chr1:45517600-45526800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr1:45517800-45525600 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:45520400-45529200 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr1:45521200-45525800 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr1:45521200-45525800 Strong transcription HepG2 liver
25 chr1:45521200-45526600 Strong transcription Ovary ovary
26 chr1:45521400-45525800 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr1:45521400-45526000 Strong transcription Brain Germinal Matrix brain
28 chr1:45521400-45527400 Weak transcription Fetal Intestine Small intestine
29 chr1:45522200-45524800 Strong transcription Brain Anterior Caudate brain
30 chr1:45522400-45524800 Strong transcription Stomach Smooth Muscle stomach
31 chr1:45522600-45524600 Strong transcription Brain Substantia Nigra brain
32 chr1:45522600-45524600 Strong transcription Duodenum Mucosa Duodenum
33 chr1:45522600-45525800 Strong transcription Brain Hippocampus Middle brain
34 chr1:45522600-45526000 Strong transcription Fetal Brain Female brain
35 chr1:45522800-45524400 Strong transcription Sigmoid Colon Sigmoid Colon
36 chr1:45523000-45524600 Strong transcription Aorta Aorta
37 chr1:45523000-45525200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr1:45523000-45525200 Strong transcription Brain Angular Gyrus brain
39 chr1:45523000-45525400 Weak transcription Adipose Nuclei Adipose
40 chr1:45523400-45527400 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:45523600-45523800 Weak transcription Fetal Intestine Large intestine
42 chr1:45523600-45526200 Weak transcription Colonic Mucosa Colon
43 chr1:45523600-45526600 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr1:45523600-45527400 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015