Variant report

Variant	rs567469939
Chromosome Location	chr11:71278995-71278996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:71278880-71279030	NHDF-neo	bronchial:	n/a	n/a
2	CTCF	chr11:71278606-71279019	K562	blood:	n/a	chr11:71278817-71278838
3	RUNX3	chr11:71278674-71279105	GM12878	blood:	n/a	n/a
4	CTCF	chr11:71278860-71279010	HPAF	blood vessel:	n/a	n/a
5	CTCF	chr11:71278860-71279010	A549	lung:	n/a	n/a
6	CTCF	chr11:71278860-71279010	HAc	cerebellar:	n/a	n/a
7	CTCF	chr11:71278860-71279010	BJ	skin:	n/a	n/a
8	CTCF	chr11:71278860-71279010	HepG2	liver:	n/a	n/a
9	CTCF	chr11:71278860-71279010	NB4	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71159116..71165503-chr11:71274687..71279227,9	MCF-7	breast:
2	chr11:71278406..71279386-chr11:71291430..71292089,2	MCF-7	breast:
3	chr11:71278628..71280477-chr11:71289049..71291000,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000248903	TF binding region
ENSG00000249387	Chromatin interaction
ENSG00000172893	Chromatin interaction
ENSG00000172890	Chromatin interaction
ENSG00000254682	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv825988	chr11:71277262-71294289	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv975200	chr11:71277624-71280675	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv975851	chr11:71278888-71295301	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71277000-71279200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr11:71277200-71280400	Enhancers	Adipose Nuclei	Adipose
3	chr11:71277400-71279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:71277600-71279000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:71277600-71279000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:71277600-71279800	Weak transcription	Left Ventricle	heart
7	chr11:71277600-71280400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:71277600-71281600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:71277600-71282800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:71277600-71290400	Weak transcription	Right Atrium	heart
11	chr11:71278000-71279800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:71278200-71281600	Weak transcription	Spleen	Spleen
13	chr11:71278400-71279800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:71278800-71279000	Bivalent Enhancer	Fetal Stomach	stomach
15	chr11:71278800-71279000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:71278800-71279200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:71278800-71279400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:71278800-71279600	Bivalent Enhancer	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links