Variant report

Variant	rs56757452
Chromosome Location	chr14:81399586-81399587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81397911..81402411-chr14:81683829..81688491,5	K562	blood:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10132220	0.80[AFR][1000 genomes]
rs10132871	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140915	0.80[AFR][1000 genomes]
rs12587246	0.84[ASN][1000 genomes]
rs12587883	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12878167	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880008	0.83[ASN][1000 genomes]
rs12884630	0.83[ASN][1000 genomes]
rs12885049	0.87[ASN][1000 genomes]
rs12885819	0.88[ASN][1000 genomes]
rs2195101	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217175	0.80[AFR][1000 genomes]
rs2371461	0.84[ASN][1000 genomes]
rs34144142	0.84[ASN][1000 genomes]
rs34296139	0.81[ASN][1000 genomes]
rs34465155	0.81[ASN][1000 genomes]
rs34611247	0.87[ASN][1000 genomes]
rs35298517	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35728625	0.88[ASN][1000 genomes]
rs35765671	0.88[ASN][1000 genomes]
rs35847336	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742720	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55634365	0.87[ASN][1000 genomes]
rs58078360	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60407794	0.89[ASN][1000 genomes]
rs67231034	0.84[ASN][1000 genomes]
rs7149702	0.84[ASN][1000 genomes]
rs8003193	0.97[AFR][1000 genomes]
rs8021757	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81359400-81406000	Weak transcription	A549	lung
2	chr14:81359800-81407200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:81375400-81407600	Weak transcription	Gastric	stomach
4	chr14:81379400-81407400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:81382600-81406400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:81387800-81407200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:81390000-81405000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:81390000-81407200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:81392200-81407200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:81392400-81406600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:81392600-81407200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:81392600-81407200	Weak transcription	Fetal Stomach	stomach
13	chr14:81392800-81407400	Weak transcription	Esophagus	oesophagus
14	chr14:81393000-81407600	Weak transcription	Lung	lung
15	chr14:81393600-81407200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:81394000-81407400	Weak transcription	Left Ventricle	heart
17	chr14:81395000-81407400	Weak transcription	Fetal Intestine Large	intestine
18	chr14:81396000-81399800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:81396000-81401000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:81396400-81407600	Weak transcription	Aorta	Aorta
21	chr14:81397400-81407200	Weak transcription	Ovary	ovary
22	chr14:81397600-81400000	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:81397800-81400600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr14:81398000-81400600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr14:81398000-81407200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:81398000-81407200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:81398000-81407200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:81398200-81399600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr14:81398200-81399800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:81398200-81406600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:81398200-81407000	Weak transcription	Primary T cells from cord blood	blood
32	chr14:81398200-81407200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr14:81398200-81407400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:81398400-81400000	Enhancers	K562	blood
35	chr14:81398400-81406000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:81398400-81406800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:81398600-81400800	Strong transcription	Fetal Thymus	thymus
38	chr14:81398600-81406400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr14:81398800-81406200	Genic enhancers	Dnd41	blood
40	chr14:81398800-81406600	Weak transcription	HMEC	breast
41	chr14:81398800-81407200	Weak transcription	Primary B cells from cord blood	blood
42	chr14:81399000-81399800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:81399000-81400200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:81399000-81402400	Weak transcription	NHEK	skin
45	chr14:81399000-81406400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:81399000-81406400	Weak transcription	GM12878-XiMat	blood
47	chr14:81399200-81399600	Weak transcription	HSMM	muscle
48	chr14:81399200-81400200	Enhancers	HSMMtube	muscle
49	chr14:81399200-81400600	Strong transcription	Thymus	Thymus
50	chr14:81399400-81399600	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links