Variant report

Variant	rs35847336
Chromosome Location	chr14:81412494-81412495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:81412463-81412878	HUVEC	blood vessel:	n/a	n/a
2	FOS	chr14:81412407-81412931	MCF10A-Er-Src	breast:	n/a	n/a
3	FOSL1	chr14:81412421-81412993	HCT-116	colon:	n/a	n/a
4	FOSL2	chr14:81412463-81412961	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
CEP128	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10132871	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12586161	0.89[EUR][1000 genomes]
rs12587246	0.82[ASN][1000 genomes]
rs12587883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590236	0.89[EUR][1000 genomes]
rs12590277	0.89[EUR][1000 genomes]
rs12878167	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12880008	0.81[ASN][1000 genomes]
rs12884630	0.81[ASN][1000 genomes]
rs12885049	0.85[ASN][1000 genomes]
rs12885819	0.85[ASN][1000 genomes]
rs12890859	0.89[EUR][1000 genomes]
rs12892567	0.86[EUR][1000 genomes]
rs2195101	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2284715	0.86[EUR][1000 genomes]
rs2284716	0.86[EUR][1000 genomes]
rs2371461	0.88[ASN][1000 genomes]
rs34144142	0.82[ASN][1000 genomes]
rs34611247	0.84[ASN][1000 genomes]
rs35298517	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728625	0.85[ASN][1000 genomes]
rs35765671	0.85[ASN][1000 genomes]
rs3742720	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55634365	0.84[ASN][1000 genomes]
rs56757452	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58078360	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60407794	0.86[ASN][1000 genomes]
rs67231034	0.88[ASN][1000 genomes]
rs7149702	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
5	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81408800-81414200	Weak transcription	Liver	Liver
2	chr14:81408800-81421000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:81409000-81414000	Weak transcription	Thymus	Thymus
4	chr14:81409200-81415400	Weak transcription	Placenta	Placenta
5	chr14:81409600-81412600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:81410200-81420000	Weak transcription	Dnd41	blood
7	chr14:81411400-81413600	Enhancers	HMEC	breast
8	chr14:81411800-81412600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:81411800-81413200	Enhancers	NHEK	skin
10	chr14:81411800-81416800	Strong transcription	Fetal Thymus	thymus
11	chr14:81412000-81412600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:81412000-81412600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:81412200-81413000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:81412400-81413000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:81412400-81414800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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