Variant report

Variant	rs2284715
Chromosome Location	chr14:81429871-81429872
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:81429846-81429878	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81429469..81431335-chr14:81685731..81687718,2	K562	blood:
2	chr14:81429871..81432242-chr14:81433461..81436310,2	MCF-7	breast:

Variant related genes	Relation type
CEP128	TF binding region
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10132871	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1035145	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs11850285	0.81[ASN][1000 genomes]
rs12586161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12587883	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs12590236	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12590262	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12590277	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12890859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12892567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110695	0.82[AMR][1000 genomes]
rs2160214	0.82[AMR][1000 genomes]
rs2195101	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs2268453	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2284716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284721	0.90[JPT][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs2284723	0.83[ASN][1000 genomes]
rs2284725	0.82[ASN][1000 genomes]
rs2284728	0.82[ASN][1000 genomes]
rs2300517	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2300518	0.81[ASN][1000 genomes]
rs2300520	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs35298517	0.85[EUR][1000 genomes]
rs35789224	0.82[AMR][1000 genomes]
rs35847336	0.86[EUR][1000 genomes]
rs3742720	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs3783946	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58078360	0.82[EUR][1000 genomes]
rs58838870	0.82[ASN][1000 genomes]
rs59103962	0.82[ASN][1000 genomes]
rs59627467	0.82[ASN][1000 genomes]
rs7154821	0.82[AMR][1000 genomes]
rs72693081	0.82[ASN][1000 genomes]
rs72693091	0.80[ASN][1000 genomes]
rs8003402	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes]
rs8022899	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81427600-81431800	Genic enhancers	Dnd41	blood
2	chr14:81429000-81432600	Weak transcription	Fetal Thymus	thymus
3	chr14:81429200-81430000	Weak transcription	Thymus	Thymus

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