Variant report

Variant	rs2300520
Chromosome Location	chr14:81459186-81459187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81459039..81460953-chr14:81635224..81637518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10150391	0.86[CEU][hapmap]
rs1035145	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11850285	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12101255	0.84[AFR][1000 genomes]
rs12101261	0.83[AFR][1000 genomes]
rs12147744	0.80[JPT][hapmap]
rs12323699	0.94[AMR][1000 genomes]
rs12586161	0.90[JPT][hapmap]
rs12590262	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12590682	0.81[JPT][hapmap]
rs12884630	0.85[JPT][hapmap]
rs12890859	0.95[CHD][hapmap];0.90[JPT][hapmap]
rs12892567	0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs17111346	0.84[AFR][1000 genomes]
rs2110695	0.82[ASN][1000 genomes]
rs2160214	0.86[ASN][1000 genomes]
rs2268453	0.91[ASN][1000 genomes]
rs2268462	0.93[EUR][1000 genomes]
rs2268463	0.93[EUR][1000 genomes]
rs2268464	0.93[EUR][1000 genomes]
rs2268465	0.90[EUR][1000 genomes]
rs2284715	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2284716	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2284721	0.83[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.86[ASN][1000 genomes]
rs2284723	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2284725	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284728	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284729	0.90[EUR][1000 genomes]
rs2284731	0.90[EUR][1000 genomes]
rs2284732	0.90[EUR][1000 genomes]
rs2300517	0.91[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[ASN][1000 genomes]
rs2300518	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28440011	0.92[AMR][1000 genomes]
rs35789224	0.82[ASN][1000 genomes]
rs3783944	0.89[EUR][1000 genomes]
rs3783946	0.96[ASN][1000 genomes]
rs58729405	0.93[EUR][1000 genomes]
rs58838870	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59103962	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59627467	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67130762	0.93[EUR][1000 genomes]
rs67256654	0.93[EUR][1000 genomes]
rs67391693	0.90[EUR][1000 genomes]
rs68104217	0.93[EUR][1000 genomes]
rs7149747	0.87[EUR][1000 genomes]
rs7149900	0.93[EUR][1000 genomes]
rs7150082	0.90[EUR][1000 genomes]
rs7154106	0.93[EUR][1000 genomes]
rs7154821	0.82[ASN][1000 genomes]
rs72689907	0.84[EUR][1000 genomes]
rs72689910	0.84[EUR][1000 genomes]
rs72693081	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693091	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72695035	0.83[EUR][1000 genomes]
rs8003061	0.83[AFR][1000 genomes]
rs8003402	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8007809	0.90[EUR][1000 genomes]
rs8022899	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81456200-81459400	Weak transcription	Dnd41	blood
4	chr14:81459000-81459200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:81459000-81459200	Enhancers	Liver	Liver

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