Variant report

Variant	rs2300518
Chromosome Location	chr14:81458516-81458517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81456409..81459092-chr14:81684225..81686871,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1035145	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11850285	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589960	0.89[AMR][1000 genomes]
rs12590262	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2110695	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2160214	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2268453	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2268462	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2268463	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2268464	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2268465	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2284715	0.81[ASN][1000 genomes]
rs2284716	0.81[ASN][1000 genomes]
rs2284721	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2284723	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284725	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2284728	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2284729	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2284731	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2284732	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2300517	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2300520	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35789224	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36193909	0.89[AMR][1000 genomes]
rs3783944	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3783946	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56169819	0.93[AMR][1000 genomes]
rs58729405	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58838870	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59103962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59627467	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67130762	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67256654	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67391693	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68104217	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7149747	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7149900	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7150082	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7154106	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7154821	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72689907	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72689910	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72693081	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72693091	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72695035	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8003402	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8007809	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8022899	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81456200-81459400	Weak transcription	Dnd41	blood
4	chr14:81458000-81458800	Enhancers	Liver	Liver

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