Variant report

Variant	rs72689910
Chromosome Location	chr14:81482756-81482757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10873332	0.80[ASN][1000 genomes]
rs11850285	0.84[EUR][1000 genomes]
rs12436366	0.86[ASN][1000 genomes]
rs2268462	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2268463	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2268464	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2268465	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2268466	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2284723	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2284725	0.84[EUR][1000 genomes]
rs2284728	0.84[EUR][1000 genomes]
rs2284729	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2284731	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2284732	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2300518	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2300520	0.84[EUR][1000 genomes]
rs28440011	0.81[EUR][1000 genomes]
rs3783944	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4899784	0.87[ASN][1000 genomes]
rs4903965	0.86[ASN][1000 genomes]
rs4903967	0.87[ASN][1000 genomes]
rs56169819	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58729405	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58838870	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59103962	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59484155	0.86[ASN][1000 genomes]
rs59627467	0.84[EUR][1000 genomes]
rs67130762	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67256654	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67391693	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs68104217	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7149747	0.91[EUR][1000 genomes]
rs7149900	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7150082	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7154106	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72689907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693081	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72693091	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72695035	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007809	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8022899	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81468000-81486600	Weak transcription	Thymus	Thymus
3	chr14:81482600-81487000	Strong transcription	Dnd41	blood

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