Variant report

Variant	rs7149900
Chromosome Location	chr14:81465845-81465846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81464422..81467304-chr14:81478351..81480140,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1035145	0.83[AMR][1000 genomes]
rs11850285	0.93[EUR][1000 genomes]
rs12185020	0.92[ASN][1000 genomes]
rs12323699	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12589960	0.83[AMR][1000 genomes]
rs12590262	0.85[AMR][1000 genomes]
rs2110695	0.85[AMR][1000 genomes]
rs2160214	0.85[AMR][1000 genomes]
rs2268453	0.85[AMR][1000 genomes]
rs2268462	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268463	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268464	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268465	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268466	0.81[AMR][1000 genomes]
rs2284721	0.85[AMR][1000 genomes]
rs2284723	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2284725	0.93[EUR][1000 genomes]
rs2284728	0.93[EUR][1000 genomes]
rs2284729	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284731	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284732	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300517	0.85[AMR][1000 genomes]
rs2300518	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2300520	0.93[EUR][1000 genomes]
rs28440011	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34146411	0.91[ASN][1000 genomes]
rs35789224	0.85[AMR][1000 genomes]
rs36193909	0.83[AMR][1000 genomes]
rs3783944	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783946	0.85[AMR][1000 genomes]
rs56169819	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58729405	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58838870	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59103962	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59627467	0.93[EUR][1000 genomes]
rs67130762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67256654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67391693	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68104217	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7149747	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150082	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7154106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7154821	0.85[AMR][1000 genomes]
rs72689907	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72689910	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72693081	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72693091	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72695035	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8003402	0.82[AMR][1000 genomes]
rs8007809	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022899	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs917986	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81463000-81467200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:81463200-81469000	Weak transcription	K562	blood
4	chr14:81464400-81466000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:81464400-81466800	Weak transcription	Thymus	Thymus
6	chr14:81465600-81467000	Weak transcription	Dnd41	blood
7	chr14:81465800-81466200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links