Variant report

Variant	rs12323699
Chromosome Location	chr14:81464286-81464287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81461329..81464418-chr14:81684245..81687408,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11850285	0.94[AMR][1000 genomes]
rs12185020	0.92[ASN][1000 genomes]
rs2268462	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268463	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268464	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268465	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284725	0.91[AMR][1000 genomes]
rs2284728	0.91[AMR][1000 genomes]
rs2284729	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284731	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284732	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300520	0.94[AMR][1000 genomes]
rs28440011	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34146411	0.91[ASN][1000 genomes]
rs3783944	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56169819	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58729405	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59627467	0.91[AMR][1000 genomes]
rs67130762	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67256654	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67391693	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68104217	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7149747	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149900	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7150082	0.83[EUR][1000 genomes]
rs7154106	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007809	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs917986	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81459400-81465600	Strong transcription	Dnd41	blood
3	chr14:81463000-81467200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:81463200-81464400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:81463200-81464600	Weak transcription	Adipose Nuclei	Adipose
6	chr14:81463200-81465200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:81463200-81469000	Weak transcription	K562	blood
8	chr14:81463800-81464400	Strong transcription	Thymus	Thymus

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