Variant report

Variant	rs36193909
Chromosome Location	chr14:81439642-81439643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81437706..81439686-chr14:81442892..81444755,2	MCF-7	breast:
2	chr14:81432696..81434242-chr14:81439337..81441996,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1035145	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12589960	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12590262	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12892567	0.84[AFR][1000 genomes]
rs2110695	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2160214	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2268453	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268462	0.81[AMR][1000 genomes]
rs2268463	0.81[AMR][1000 genomes]
rs2268464	0.81[AMR][1000 genomes]
rs2284716	0.84[AFR][1000 genomes]
rs2284721	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2284723	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2284729	0.83[AMR][1000 genomes]
rs2284731	0.83[AMR][1000 genomes]
rs2284732	0.83[AMR][1000 genomes]
rs2300517	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2300518	0.89[AMR][1000 genomes]
rs35789224	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3783944	0.81[AMR][1000 genomes]
rs3783946	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56169819	0.83[AMR][1000 genomes]
rs58838870	0.87[AMR][1000 genomes]
rs59103962	0.89[AMR][1000 genomes]
rs67130762	0.83[AMR][1000 genomes]
rs67256654	0.83[AMR][1000 genomes]
rs67391693	0.81[AMR][1000 genomes]
rs68104217	0.83[AMR][1000 genomes]
rs7149900	0.83[AMR][1000 genomes]
rs7150082	0.81[AMR][1000 genomes]
rs7154106	0.83[AMR][1000 genomes]
rs7154821	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72693081	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72693091	0.85[AMR][1000 genomes]
rs8003402	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8022899	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81434000-81442600	Genic enhancers	Dnd41	blood
2	chr14:81436200-81440200	Enhancers	Thymus	Thymus
3	chr14:81436600-81440400	Enhancers	Fetal Thymus	thymus
4	chr14:81438400-81439800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:81438800-81440200	Weak transcription	Fetal Brain Female	brain
6	chr14:81438800-81442000	Enhancers	Fetal Brain Male	brain
7	chr14:81439000-81440600	Enhancers	Primary T cells from cord blood	blood
8	chr14:81439000-81442200	Enhancers	Brain Germinal Matrix	brain
9	chr14:81439000-81442400	Enhancers	Placenta	Placenta
10	chr14:81439200-81442000	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:81439400-81439800	Enhancers	Fetal Muscle Trunk	muscle
12	chr14:81439400-81440000	Weak transcription	Adipose Nuclei	Adipose
13	chr14:81439600-81439800	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr14:81439600-81440200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:81439600-81440800	Enhancers	Fetal Muscle Leg	muscle

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