Variant report

Variant	rs56767310
Chromosome Location	chr10:4858462-4858463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4857887..4858608-chr10:5325585..5326522,2	K562	blood:
2	chr10:4857632..4858594-chr10:4891971..4892610,3	K562	blood:
3	chr10:4857209..4858993-chr10:4874035..4875917,2	K562	blood:
4	chr10:4857556..4858565-chr10:4881032..4882202,10	MCF-7	breast:
5	chr10:4857628..4858745-chr10:4881174..4882066,5	MCF-7	breast:
6	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:
7	chr10:4856908..4859105-chr10:4868238..4871321,3	MCF-7	breast:
8	chr10:4857079..4859136-chr10:4895299..4898229,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165568	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12360475	0.97[ASN][1000 genomes]
rs12569410	0.87[AMR][1000 genomes]
rs12569839	0.81[AMR][1000 genomes]
rs12570011	0.87[AMR][1000 genomes]
rs12570641	0.81[AMR][1000 genomes]
rs12571065	0.87[AMR][1000 genomes]
rs12571192	0.81[AMR][1000 genomes]
rs12571212	0.87[AMR][1000 genomes]
rs12571940	0.87[AMR][1000 genomes]
rs12571967	0.81[AMR][1000 genomes]
rs12571976	0.81[AMR][1000 genomes]
rs12571980	0.81[AMR][1000 genomes]
rs12572008	0.81[AMR][1000 genomes]
rs12572181	0.87[AMR][1000 genomes]
rs12572449	0.87[AMR][1000 genomes]
rs12573197	0.87[AMR][1000 genomes]
rs12573501	0.87[AMR][1000 genomes]
rs12573669	0.87[AMR][1000 genomes]
rs12573690	0.87[AMR][1000 genomes]
rs17133680	0.81[AMR][1000 genomes]
rs17133691	0.87[AMR][1000 genomes]
rs17133693	0.87[AMR][1000 genomes]
rs17133697	0.87[AMR][1000 genomes]
rs17133705	0.87[AMR][1000 genomes]
rs17133707	0.87[AMR][1000 genomes]
rs17133710	0.87[AMR][1000 genomes]
rs17133724	0.87[AMR][1000 genomes]
rs17133747	0.87[AMR][1000 genomes]
rs17133748	0.87[AMR][1000 genomes]
rs17133751	0.87[AMR][1000 genomes]
rs17133752	0.87[AMR][1000 genomes]
rs17133753	0.87[AMR][1000 genomes]
rs17133759	0.87[AMR][1000 genomes]
rs17133762	0.87[AMR][1000 genomes]
rs17133779	0.87[AMR][1000 genomes]
rs17133780	0.87[AMR][1000 genomes]
rs1869214	0.87[AMR][1000 genomes]
rs1869215	0.87[AMR][1000 genomes]
rs1869216	0.87[AMR][1000 genomes]
rs1869217	0.87[AMR][1000 genomes]
rs1869219	0.87[AMR][1000 genomes]
rs1869220	0.87[AMR][1000 genomes]
rs1901642	0.87[AMR][1000 genomes]
rs2278869	0.87[AMR][1000 genomes]
rs2290348	0.87[AMR][1000 genomes]
rs2290349	0.87[AMR][1000 genomes]
rs2290350	0.87[AMR][1000 genomes]
rs2397982	0.87[AMR][1000 genomes]
rs2397983	0.87[AMR][1000 genomes]
rs2397985	0.87[AMR][1000 genomes]
rs2397986	0.87[AMR][1000 genomes]
rs34882719	0.87[AMR][1000 genomes]
rs35340010	0.87[AMR][1000 genomes]
rs3750737	0.81[AMR][1000 genomes]
rs3750738	0.81[AMR][1000 genomes]
rs3750739	0.81[AMR][1000 genomes]
rs3750740	0.81[AMR][1000 genomes]
rs41289263	0.87[AMR][1000 genomes]
rs4339941	0.87[AMR][1000 genomes]
rs4397733	0.87[AMR][1000 genomes]
rs4480435	0.87[AMR][1000 genomes]
rs4518987	0.87[AMR][1000 genomes]
rs4593903	0.87[AMR][1000 genomes]
rs72478258	0.87[AMR][1000 genomes]
rs74111799	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3522611	chr10:4857002-4859200	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3522612	chr10:4857002-4859200	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:4857400-4860600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:4857600-4858600	Weak transcription	A549	lung
5	chr10:4857600-4858600	Weak transcription	K562	blood
6	chr10:4857600-4868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:4857800-4861800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:4857800-4862400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:4858400-4858600	Enhancers	Muscle Satellite Cultured Cells	--

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