Variant report

Variant	rs74111799
Chromosome Location	chr10:4933312-4933313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs12252720	0.80[ASN][1000 genomes]
rs12569410	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12569715	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12569839	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12570011	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12570641	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12571065	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12571192	0.93[AMR][1000 genomes]
rs12571212	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12571691	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12571940	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12571967	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12571976	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12571980	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12572008	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12572181	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12572395	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572449	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573010	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12573159	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573197	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573397	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573398	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573501	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573669	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573690	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573808	0.86[EUR][1000 genomes]
rs17133680	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17133691	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17133693	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17133697	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17133705	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133707	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133710	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133724	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133747	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133748	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133751	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133752	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133753	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133759	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133762	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133779	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133780	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17133791	0.86[EUR][1000 genomes]
rs17133794	0.86[EUR][1000 genomes]
rs17133796	0.86[EUR][1000 genomes]
rs1869214	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869215	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869216	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869217	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869219	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869220	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1901642	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1993182	0.86[EUR][1000 genomes]
rs2278869	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2290348	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2290349	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2290350	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2397982	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2397983	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2397985	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2397986	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34882719	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35340010	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3750737	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3750738	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3750739	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3750740	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41289263	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4339941	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4397733	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4480435	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4518987	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4593903	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56767310	0.87[AMR][1000 genomes]
rs7070636	0.88[ASN][1000 genomes]
rs72478258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1042940	chr10:4916614-4974581	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv947581	chr10:4925629-4933637	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4908800-4944200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4910400-4936400	Weak transcription	Left Ventricle	heart
3	chr10:4915800-4943600	Weak transcription	Aorta	Aorta
4	chr10:4916800-4936400	Weak transcription	Pancreas	Pancrea
5	chr10:4918400-4968000	Weak transcription	Primary T cells from cord blood	blood
6	chr10:4919200-4936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:4925800-4936400	Weak transcription	Right Atrium	heart
8	chr10:4927800-4936200	Weak transcription	Lung	lung
9	chr10:4930600-4934600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:4930800-4934200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:4931200-4934600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:4931200-4944200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:4931400-4933400	Enhancers	HepG2	liver
14	chr10:4932200-4936000	Weak transcription	Fetal Stomach	stomach
15	chr10:4932600-4936200	Weak transcription	Liver	Liver

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