Variant report

Variant	rs56771243
Chromosome Location	chr6:36607347-36607348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36606453..36608701-chr6:36645452..36648033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56871426	1.00[EUR][1000 genomes]
rs60443156	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410261	1.00[EUR][1000 genomes]
rs9470351	1.00[AMR][1000 genomes]
rs9470352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36582800-36610800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:36602200-36608800	Weak transcription	Fetal Intestine Large	intestine
3	chr6:36602400-36610600	Weak transcription	Fetal Heart	heart
4	chr6:36602400-36610800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:36602400-36610800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:36602400-36611000	Weak transcription	Right Atrium	heart
7	chr6:36602600-36609400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:36602600-36610400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:36602800-36610400	Weak transcription	Osteobl	bone
10	chr6:36603000-36608800	Weak transcription	Colonic Mucosa	Colon
11	chr6:36603000-36612800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:36603200-36609000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:36603400-36611000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:36605000-36610600	Weak transcription	Stomach Mucosa	stomach
15	chr6:36605200-36609000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:36605200-36610600	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:36605400-36608800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:36605400-36609000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:36605400-36611200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:36605600-36607600	Enhancers	Liver	Liver
21	chr6:36605600-36610400	Weak transcription	Ovary	ovary
22	chr6:36605600-36611400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:36605800-36609200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:36605800-36610400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:36605800-36610400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:36605800-36610800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:36605800-36610800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:36605800-36610800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:36605800-36611000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:36605800-36611000	Weak transcription	Fetal Stomach	stomach
31	chr6:36607200-36610800	Weak transcription	Pancreas	Pancrea

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