Variant report

Variant	rs73410261
Chromosome Location	chr6:36605040-36605041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36561858..36565797-chr6:36601247..36605469,3	K562	blood:
2	chr6:36600489..36602110-chr6:36604280..36606519,2	K562	blood:
3	chr6:36598994..36606227-chr6:36643995..36648555,17	MCF-7	breast:
4	chr6:36603987..36606106-chr6:36685798..36688439,2	K562	blood:
5	chr6:36562557..36565797-chr6:36602689..36605789,3	K562	blood:
6	chr6:36603732..36607327-chr6:36611483..36614023,4	K562	blood:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56771243	1.00[EUR][1000 genomes]
rs56871426	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36582800-36610800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:36600000-36605200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:36601000-36605800	Enhancers	Fetal Muscle Trunk	muscle
4	chr6:36601200-36605800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:36602200-36608800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:36602400-36605200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:36602400-36610600	Weak transcription	Fetal Heart	heart
8	chr6:36602400-36610800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:36602400-36610800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:36602400-36611000	Weak transcription	Right Atrium	heart
11	chr6:36602600-36609400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:36602600-36610400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:36602800-36605600	Weak transcription	Liver	Liver
14	chr6:36602800-36610400	Weak transcription	Osteobl	bone
15	chr6:36603000-36608800	Weak transcription	Colonic Mucosa	Colon
16	chr6:36603000-36612800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:36603200-36609000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:36603400-36606200	Weak transcription	Thymus	Thymus
19	chr6:36603400-36611000	Weak transcription	Adipose Nuclei	Adipose
20	chr6:36604000-36605400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:36604000-36605600	Enhancers	Ovary	ovary
22	chr6:36604200-36605800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:36604200-36605800	Enhancers	Fetal Muscle Leg	muscle
24	chr6:36604400-36605400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:36604400-36605400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:36604400-36605600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:36604400-36605800	Enhancers	Fetal Stomach	stomach
28	chr6:36604600-36605200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:36604600-36605200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:36604600-36605200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:36604600-36605200	Enhancers	Brain Hippocampus Middle	brain
32	chr6:36604600-36605200	Bivalent Enhancer	HepG2	liver
33	chr6:36604600-36605400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:36604600-36605400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:36604600-36605400	Enhancers	Brain Anterior Caudate	brain
36	chr6:36604600-36605400	Enhancers	Fetal Thymus	thymus
37	chr6:36604600-36605800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:36604600-36605800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:36604800-36605600	Enhancers	Brain Cingulate Gyrus	brain
40	chr6:36604800-36606000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:36605000-36606000	Enhancers	Fetal Brain Male	brain
42	chr6:36605000-36610600	Weak transcription	Stomach Mucosa	stomach

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