Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17059420	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059453	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059520	1.00[EUR][1000 genomes]
rs17059525	1.00[EUR][1000 genomes]
rs55925405	1.00[EUR][1000 genomes]
rs56116438	0.90[AMR][1000 genomes]
rs56684748	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56725541	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992244	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72992266	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992272	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992280	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992285	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992289	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72992294	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992295	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992299	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72994307	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72994310	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72994322	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72994328	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72996254	1.00[EUR][1000 genomes]
rs72996263	1.00[EUR][1000 genomes]
rs72996271	1.00[EUR][1000 genomes]
rs72996290	1.00[EUR][1000 genomes]
rs72996293	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130993800-131005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:130996400-131000600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:130996600-131001600	Weak transcription	HUVEC	blood vessel
4	chr6:130997000-131001400	Weak transcription	NH-A	brain
5	chr6:130997600-130999600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:130997600-131005400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:130997800-131000600	Weak transcription	NHLF	lung
8	chr6:130997800-131000600	Weak transcription	Osteobl	bone
9	chr6:130998000-131002000	Weak transcription	HSMM	muscle
10	chr6:130999000-130999600	Enhancers	Ovary	ovary
11	chr6:130999200-131000200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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